Asymmetric sequences are indicated by *.
Single letter code:
R = G or A;
Y = C or T;
W = A or T;
M = A or C;
K = G or T;
S = C or G;
H = A, C or T;
V = A, C or G;
B = C, G or T;
D = A, G or T;
N = G, A, T or C.
Recognition sequence | Enzyme | 3'-protruding end (5'=>3') |
| 1nt | 2nt | 3nt | 4nt | 9nt |
| ACGT^ | TaiI |
|
|
| ACGT |
|
| ACN^GT | TaaI | N |
|
|
|
|
| ACTGG(1/-1)^* | BseNI |
| GN |
|
|
|
| ACTGGG(5/4)^* | BfiI | N |
|
|
|
|
| ATGCA^T | Mph1103I |
|
|
| TGCA |
|
| CACNNN^GTG | AdeI |
|
| NNN |
|
|
| ^(0/2)CACTGC* | BtsI |
| NN |
|
|
|
| CAGNNN^CTG | CaiI |
|
| NNN |
|
|
| CASTG(2/-7)^ | TspRI |
|
|
|
| NNCASTGNN |
| ^(0/2)CATCC* | BseGI |
| NN |
|
|
|
| CATG^ | NlaIII |
|
|
| CATG |
|
| ^(0/2)CATTGC* | BseMI |
| NN |
|
|
|
| ^(-1/1)CCAGT* | BseNI |
| NC |
|
|
|
| CCANNNNN^NNNNTGG | XcmI | N |
|
|
|
|
| CCANNNNN^NTGG | BstXI |
|
|
| NNNN |
|
| CCANNNN^NTGG | Van91I |
|
| NNN |
|
|
| ^(4/5)CCCAGT* | BfiI | N |
|
|
|
|
| CCGC^GG | Cfr42I |
| GC |
|
|
|
| CCNNNNN^NNGG | BseLI |
|
| NNN |
|
|
| CCTC(7/6)^* | MnlI | N |
|
|
|
|
| CCTGCA^GG | SdaI |
|
|
| TGCA |
|
| CGAT^CG | PvuI |
| AT |
|
|
|
| CGRY^CG | Bsh1285I |
| RY |
|
|
|
| CTCAG(10/8)^* | BseMII |
| NN |
|
|
|
| ^(14/16)CTCCAG* | GsuI |
| NN |
|
|
|
| ^(8/10)CTCCTC* | BseRI |
| NN |
|
|
|
| CTGAAG(16/14)^* | Eco57I |
| NN |
|
|
|
| CTGRAG(16/14)^* | Eco57MI |
| NN |
|
|
|
| ^(8/10)CTGAG* | BseMII |
| NN |
|
|
|
| ^(14/16)CTGCAC* | BsgI |
| NN |
|
|
|
| CTGCA^G | PstI |
|
|
| TGCA |
|
| CTGGAG(16/14)^* | GsuI |
| NN |
|
|
|
| ^(14/16)CTTCAG* | Eco57I |
| NN |
|
|
|
G, R, T